BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016C11LP1|AL426988
(655 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1233 1219 0.0
>3x_Contig1233
Length = 4604
Score = 1219 bits (611), Expect = 0.0
Identities = 643/655 (98%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 1 attcgctgtcggtatgaatcacatatttgttcagttttttgccctcttttaaattgtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 attcgctgtcggtatgaatcacatatttgttcagttttttgccctcttttaaattgtccc 2826
Query: 61 aaatgtcagagagagcatcagatacagcagagatttcagctctgttgttggtttggttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 aaatgtcagagagagcatcagatacagcagagatttcagctctgttgttggtttggttac 2766
Query: 121 cattcgtcaatggtcttgcgattcttctatcctcgccctcgaaawatataccgtacccgg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2765 cattcgtcaatggtcttgcgattcttctatcctcgccctcgaaatatataccgtacccgg 2706
Query: 181 ctcttgcaccctcaaatccattgttgaaagaggatccatcgcagtaaacgttgcatgggg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2705 ctcttgcaccctcaaatccattgttgaaagaggatccatcgcagtaaacgttgcatggtg 2646
Query: 241 cggctgggacacggacttgggaacggcgttcaggtgkgagtttgtgagcttgtgagaatk 300
| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2645 ctgctgggacacggacttgggaacggcgttcaggtgtgattttgtgagcttgtgagaatt 2586
Query: 301 gggagcgcgcggagkattgagatgcgaatatatcgtttcgttagaggcacgtccttgtat 360
|||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2585 ggga-cgc-cgtagtattgagatgcgaatatatcgtttcgttagaggcacgtccttgtat 2528
Query: 361 gaaatcgtctgccttagaaggagtgtcaaatttcctgtaggaaaggtttctacggccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 gaaatcgtctgccttagaaggagtgtcaaatttcctgtaggaaaggtttctacggccttc 2468
Query: 421 gacgtagcttttgcaatcggcccagttggtaaacactttgtttggtactgagctgtcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 gacgtagcttttgcaatcggcccagttggtaaacactttgtttggtactgagctgtcact 2408
Query: 481 acttctcaccgcataraatgaggaagatgaaggtggtggtggtggcgctgccgctgctgc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407 acttctcaccgcatagaatgaggaagatgaaggtggtggtggtggcgctgccgctgctgc 2348
Query: 541 tgctgcttttgagtggtaattactataggagctgtgactgttgtagggtgcttggttgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2347 tgctgcttttgagtggtaattactataggagctgtgactgttgtagggtgcttggttgta 2288
Query: 601 agtarattgctgatggcctccgtagtgcccgtaactggaccctgaactggatcca 655
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2287 agtagattgctgatggcctccgtagtgcccgtaactggaccctgaactggatcca 2233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3940
Number of Sequences: 1807
Number of extensions: 3940
Number of successful extensions: 310
Number of sequences better than 1.0e-20: 1
length of query: 655
length of database: 10,358,551
effective HSP length: 16
effective length of query: 639
effective length of database: 10,329,639
effective search space: 6600639321
effective search space used: 6600639321
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)